I finally found a tiny blurb wrapping up this issue in yesterday's Fresno Bee. This story just dropped out of the press after Congress passed their bill. The judge reversed himself in a verbal ruling, which is no surprise unless he wanted to start a battle with Congress and the President. The article doesn't say anything about any of the proposals that HSHA put forth, but since his ruling was verbal, it's safe to assume there are no new limits on commercial packers. Quiet ending until the Wilderness Stewardship Plan is completed.
http://www.fresnobee.com/2012/05/24/2849836/judge-oks-pack-animals-in-sierra.html