[W]hy is the riskier Mountaineers Route open, while the less risky Main Trail is shut down?
The answer is that the MR attracts far fewer people who are attempting something that is either beyond their skills and abilities or without someone like a guide who possesses the requisite skills and abilities. The majority of the rescues on Mt. Whitney are on the main trail or the chute, so at a time when social distancing is important and staffing levels are difficult to achieve or maintain, it actually makes sense from a risk management perspective. By waiting until the cables and chute are clear, they are probably eliminating a fairly high number of SAR calls.
Another factor is very likely the call volume. Remember,
all of these permits require a phone conversation now.